aPhyloGeo

User Guide

  • Installation
  • Tutorial

Available Analyses

  • Sequence Similarity Algorithms
  • Metrics

Api

  • aphylogeo.genetic_trees
  • aphylogeo.alignement
  • aphylogeo.multiProcessor
  • aphylogeo.params
  • aphylogeo.utils

Misc

  • Editing User Preferences
  • Alignment Dependencies Installation
  • References
aPhyloGeo
  • Index
  • Edit on GitHub

Index

A | B | E | G | L | M | P | S | T | U | V

A

  • aphylogeo.genetic_trees
    • module
  • aphylogeo.multiProcessor
    • module
  • aphylogeo.params
    • module

B

  • buttler() (aphylogeo.multiProcessor.Multi method)

E

  • executeOnce() (aphylogeo.multiProcessor.Multi method)
  • executeSmall() (aphylogeo.multiProcessor.Multi method)

G

  • GeneticTrees (class in aphylogeo.genetic_trees)
  • get_trees_str() (aphylogeo.genetic_trees.GeneticTrees method)

L

  • load_trees_from_file() (aphylogeo.genetic_trees.GeneticTrees class method)
  • load_trees_from_json() (aphylogeo.genetic_trees.GeneticTrees class method)

M

  • memUpdate() (aphylogeo.multiProcessor.Multi method)
  • module
    • aphylogeo.genetic_trees
    • aphylogeo.multiProcessor
    • aphylogeo.params
  • Multi (class in aphylogeo.multiProcessor)

P

  • PARAMETER_KEYS (aphylogeo.params.Params attribute)
  • Params (class in aphylogeo.params)
  • processingLargeData() (aphylogeo.multiProcessor.Multi method)
  • processingSmallData() (aphylogeo.multiProcessor.Multi method)

S

  • save_trees_to_json() (aphylogeo.genetic_trees.GeneticTrees method)

T

  • terminalUpdate() (aphylogeo.multiProcessor.Multi method)
  • testtrees() (aphylogeo.genetic_trees.GeneticTrees class method)

U

  • update_from_dict() (aphylogeo.params.Params class method)

V

  • validate_and_set_params() (aphylogeo.params.Params class method)

© Copyright 2024, Tahiri Lab.

Built with Sphinx using a theme provided by Read the Docs.